estimate_kmer_counts.hpp

// SPDX-FileCopyrightText: 2006-2024, Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2024, Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: BSD-3-Clause
 
#pragma once
 
#include <cstddef> // for size_t
#include <vector>  // for vector
 
#include <hibf/sketch/hyperloglog.hpp> // for hyperloglog
 
namespace seqan::hibf::sketch
{
 
inline void estimate_kmer_counts(std::vector<seqan::hibf::sketch::hyperloglog> const & sketches,
                                 std::vector<size_t> & kmer_counts)
{
    kmer_counts.resize(sketches.size());
 
    for (size_t i = 0; i < sketches.size(); ++i)
        kmer_counts[i] = sketches[i].estimate();
}
 
} // namespace seqan::hibf::sketch